Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders

⚡️ A curated list of awesome performance stories

All code necessary for reconstructing Bonsai-trees on high-dimensional data and visualizing them in Bonsai-scout

Fully Local Manus AI. No APIs, No $200 monthly bills. Enjoy an autonomous agent that thinks, browses the web, and code for the sole cost of electricity. 🔔 Official updates only via twitter @Martin9…

Prefect is a workflow orchestration framework for building resilient data pipelines in Python.

Minimal reproduction of DeepSeek R1-Zero

AI-powered ab initio biomolecular dynamics simulation

𝗢𝘄𝗻 𝗬𝗼𝘂𝗿 𝗗𝗮𝘁𝗮 𝗦𝗰𝗶𝗲𝗻𝗰𝗲. Skore's open-source Python library accelerates ML model development with automated evaluation reports, smart methodological guidance, and comprehensive cross-validation analy…

A fun party trick to run Python code from another venv into this one.

Obsidian Web Clipper templates for various sites.

🛠 Python project template generator with batteries included

NeuroKit2: The Python Toolbox for Neurophysiological Signal Processing

Fast State-of-the-Art Static Embeddings

BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody se…

An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.

Protein function prediction using a variational autoencoder

A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.

5ire is a cross-platform desktop AI assistant, MCP client. It compatible with major service providers, supports local knowledge base and tools via model context protocol servers .

A course on aligning smol models.

Sync notes between local and cloud with smart conflict: S3 (Amazon S3/Cloudflare R2/Backblaze B2/...), Dropbox, webdav (NextCloud/InfiniCLOUD/Synology/...), OneDrive, Google Drive (GDrive), Box, pC…

🌱 a fast, batteries-included static-site generator that transforms Markdown content into fully functional websites

An extremely fast Python package and project manager, written in Rust.

Improved Inference of Ortholog Groups using Hidden Markov Models

Next Generation Visual Programming System

Official repo for paper "Structured 3D Latents for Scalable and Versatile 3D Generation" (CVPR'25 Spotlight).

Shapley Interactions and Shapley Values for Machine Learning

IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.