Whole Genome Alignment Tools

Open Human Genome Library

Continuous Unix commit history from 1970 until today

Fast alignment tool based on bwa-mem

Windowed k-mer entropy estimates

Munge GenBank files into FASTA and tab-separated metadata

Instantaneous Metagenome Taxonomic Profiling with MetaKSSD

minimal cross-platform standalone C headers

KiwiSDR: BeagleBone web-accessible shortwave receiver and software-defined GPS

Modules written for ecewo

Express-C Effect for Web Operations

A intuitive, lightweight web framework in C for building modern web applications

Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome

Dear ImGui: Bloat-free Graphical User interface for C++ with minimal dependencies

Profiling NTM WGS data

A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.

Tetra demodulator plugin for SDR++ (output can be fed to tetra-rx from osmo-tetra)

Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.

Rapid comparison and dereplication of genomes

Expose the contents of .docx files without leaving your terminal. Fast, safe, and smart — no Office required!

🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

Standard database for the TBProfiler tool

FFmpeg Assembly Language Lessons

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

Repository for general metagenomics Nextflow pipeline