Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

The next version of bwa-mem

Minimalist web framework for C

Converts your end of line and back again

The second version of the Kraken taxonomic sequence classification system

Intelligent Storage Acceleration Library

Simple pileup-based variant caller

Symmetric DUST for finding low-complexity regions in DNA sequences

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

LLM training in simple, raw C/CUDA

Calculate confidence scores from Kraken2 output

A standalone and lightweight C library

the pangenome graph builder

A C library for creating Excel XLSX files.

Inference Llama 2 in one file of pure C

A simple logging library implemented in C99

Tools for manipulating sequence graphs in the GFA and rGFA formats