Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.

A variant caller for the GBA gene using WGS data

DRAGEN open-source mapper

Compare Genomes in Your Browser

Local complexity estimation from DNA sequences

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

Converts man pages to Markdown

Beautify the Git commit hash! This is a little useless toy inspired by BitCoin's "proof of work" concept. It enables you to modify your Git commit to enforce a certain prefix on the Git commit hash.

A small DFA for under 16 states

Code for computing various support scores for internodes

Codebase that benchmarks alignment-free sequence comparison methods

A small study in hardware accelerated AoS reversal

suffix array construction with SA-IS in x86 assembly

A quick dirty hack to make sure code on GitHub uses BLAST the right way

The LaTeX beamerposter package

Sequence analysis library used by Eddy/Rivas lab code

A genomic minhashing implementation in Rust

Parallel Lightweight Suffix Array Algorithm.

Bash script to run gnuplot using LaTeX terminal, compile (PDF-)LaTeX, and extract figure.

a collection of scripts for organising bacterial genomes by species

A cross platform C99 library to get cpu features at runtime.

A modern LaTeX Beamer theme

Songpress

Testing of phylogenetic inference methods

Latex template for a song book

Packages I maintain on the Arch User Repository (AUR)

Automatically exported from code.google.com/p/exercisesheet

Collection of Suffix Array Construction Algorithms (SACAs)