RNAGym is an extensive benchmark suite and resource for RNA fitness and structure prediction

Awesome-AI-Virtual-Cell

All learning projects

📦 Importing tRNAscan-SE output as GRanges

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The World's Fastest Claude Code Launcher Make Claude Code launching simpler Click Dock to launch, or start from any folder instantly.

SnoBIRD (BERT-based Identification and Refinement of C/D box snoRNAs) is a Snakemake-based tool which predicts C/D box snoRNA genes (either expressed or pseudogenes) contained in any genomic sequence.

Integrative Composable Visualization Framework for ggplot2

Automated workflows for Claude Code. Features spec-driven development for new features (Requirements → Design → Tasks → Implementation) and streamlined bug fix workflow for quick issue resolution (…

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A Python library for extracting structured information from unstructured text using LLMs with precise source grounding and interactive visualization.

RAGFlow is an open-source RAG (Retrieval-Augmented Generation) engine based on deep document understanding.

CRISPSR-GPT LLM Agent Public Welcome Page

Ragflow-Plus 是 Ragflow 的二次开发版本，使其更为简洁实用

Document (PDF, Word, PPTX ...) extraction and parse API using state of the art modern OCRs + Ollama supported models. Anonymize documents. Remove PII. Convert any document or picture to structured …

Dynamically constructs and adapts an LLM-generated taxonomy to a given corpus across multiple dimensions.

Toolkit for linearizing PDFs for LLM datasets/training

Comprehensive percentage assessment of NCIN-RNAs

OCRFlux is a lightweight yet powerful multimodal toolkit that significantly advances PDF-to-Markdown conversion, excelling in complex layout handling, complicated table parsing and cross-page conte…

A high-precision protein classification model

Full guide on claude tips and tricks and how you can optimise your claude code the best & strive to find every command possible even hidden ones!

Predicting high-fitness mutations based on protein inverse folding models

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MaSIF-neosurf: surface-based protein design for ternary complexes.

Identifying essential genes using Graph Neural Networks

Use any LLM in Claude Code

Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tuning them on personal genome and transcriptome data.

DNA Large Language Model Toolkit

A trainable PyTorch reproduction of AlphaFold 3.