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Genome modeling and design across all domains of life

Gene Set Enrichment Analysis in Python

Code for the MLPP method described in: "Co-evolution based machine-learning for predicting functional interactions between human genes" Stupp et al.

🧑‍🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), ga…

Python SDK, Proxy Server (LLM Gateway) to call 100+ LLM APIs in OpenAI format - [Bedrock, Azure, OpenAI, VertexAI, Cohere, Anthropic, Sagemaker, HuggingFace, Replicate, Groq]

🚀 智谱清言ChatGLM-4-Plus大模型逆向API【特长：超强智能体】，支持高速流式输出、支持智能体对话、支持多轮对话、支持沉思模型、支持Zero思考推理模型、支持视频生成、支持AI绘图、支持联网搜索、支持长文档解读、支持代码调用、支持图像解析，零配置部署，多路token支持，自动清理会话痕迹，仅供测试，如需商用请前往官方开放平台。

Production-ready platform for agentic workflow development.

A pipeline for the identification of fungi in public metagenomics datasets

Tabula Muris Senis

Caizzi, Monteiro-Martins (2021)

Multi-omics analysis protocols by Lyu.

Data and the co-authored network I extracted for lab selection in 3D genome research field

Codes used for all the data analysis steps in the paper "Single-cell transcriptomics identifies an effectorness gradient shaping the response of CD4+ T cells to cytokines"

ReplexChIPQC is a pair of R scripts and an R markdown replicating and extending the functionality of the R package ChIPQC. Featuring highly customizable reports for any size experiment, elimination…

An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data

A 80s style theme for RStudio v1.2+

analysis for the paper "high-throughput analysis of lncRNA core promoters elucidates rules governing tissue specificity"

Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.

🌈Beamer风格的幻灯片模板集。包含了PowerPoint和Keynote两套格式。

CodeHub is an iOS application written using Xamarin

GENome Organisation Visual Analytics

Multi-threaded C++ parser to convert registered ChIP-SEQ peak IDs (HOMER) to table of average peak intensities

All learning projects