Stars
A TUI for monitoring Snakemake workflows in real-time.
Bioinformatics web-platform visualisation dashboard creation
Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
This is the development home of the workflow management system Snakemake. For general information, see
a straightforward NixOS setup for my homelab and personal computers
All pdfs of Victor Eijkhout's Art of HPC books and courses
A Snakemake storage plugin that reads and writes from a locally mounted filesystem using rsync.
Wrapper script for OpenConnect supporting Azure AD (SAMLv2) authentication to Cisco SSL-VPNs
Supercomputing. Seamlessly. Open, Interactive HPC Via the Web
Aggregate results from bioinformatics analyses across many samples into a single report.
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
A markdown version emoji cheat sheet
Singularity container for custom IGV webapp for HPC use
A tool to create visual HTML reports from collections of CSV/TSV tables
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
A template for standard compliant snakemake-workflows
official build specifications for jupyter
A NodeJS DRMAA for Sun Grid Engine.