Report for BioHackathon Europe 2025 project #27

Flexible Jekyll theme using bootstrap 5 as CSS framework.

ELIXIR Research Data Management Toolkit - Find the answers to your research data management questions here.

ChIP-seq peak-calling, QC and differential analysis pipeline.

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

CellAnn

This is the development home of the workflow management system Snakemake. For general information, see

This is the development home of the Snakemake wrapper repository, see

A multilingual glossary for computing and data science terms.

Singularity container for custom IGV webapp for HPC use

Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling

Rich is a Python library for rich text and beautiful formatting in the terminal.

Project metadata manager for PEPs in Python

Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.

Conda recipes for the bioconda channel.

Course focuses on the fundamental tools and methods for data entry, cleaning, analysis and visualisation using spreadsheets, OpenRefine and Python

Python Intro for Libraries

A pipeline for profiling TE-derived small RNAs

Package for including repetitive regions in peak calling from ChIP-seq datasets