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svim-asm Public
Structural Variant Identification Method using Genome Assemblies
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iGenVar Public
Forked from seqan/iGenVarThe official repository for the iGenVar project.
C++ BSD 3-Clause "New" or "Revised" License UpdatedJul 1, 2021 -
svim Public
Structural Variant Identification Method using Long Reads
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedJun 18, 2021 -
real_sv_calling_evaluation Public
Forked from wdecoster/nano-snakemakeA snakemake pipeline for SV calling evaluation from long read sequencing
Python MIT License UpdatedApr 20, 2021 -
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ssHMM Public
ssHMM is an RNA motif finder. It recovers sequence-structure motifs from RNA-binding protein data, such as CLIP-Seq data.
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wgasv Public
Forked from glennhickey/wgasvScripts for studying SVs via graphs constructed from whole-genome-alignment
Shell UpdatedAug 13, 2019 -
yeast_sv Public
Pipelines for SV genotyping using vgteam/vg on 12 yeast strains
Python UpdatedMay 29, 2019 -
SViper Public
Forked from smehringer/SViperSwipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
C++ UpdatedMay 20, 2019 -
sv-benchmark Public
Forked from PacificBiosciences/sv-benchmarkPublic Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
UpdatedMay 1, 2019 -
seqan3 Public
Forked from seqan/seqan3The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
C++ Other UpdatedApr 30, 2019 -
hal2vg Public
Forked from ComparativeGenomicsToolkit/hal2vgConvert HAL to VG
C++ MIT License UpdatedJan 15, 2019 -
tools for working with genome variation graphs
C++ Other UpdatedOct 8, 2018 -
vcflib Public
Forked from vgteam/vcfliba simple C++ library for parsing and manipulating VCF files, + many command-line utilities
C++ MIT License UpdatedOct 8, 2018 -
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