Plot structural variant signals from many BAMs and CRAMs

C++ fast hierarchical clustering algorithms

📍 Repel overlapping text labels away from each other in your ggplot2 figures.

The official repository for the iGenVar project.

SIMD partial order alignment tool/library

Python bindings to spoa

Boost LaTeX typesetting efficiency with preview, compile, autocomplete, colorize, and more.

A Zsh theme

Long read aligner

A genome browser designed for complex structural variants and long reads.

A complete computer science study plan to become a software engineer.

Chain files and scripts for coordinate conversions between hg38 and CHM13 (T2T assembly).

Long read based human genomic structural variation detection with cuteSV

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

k-mer based assembly evaluation

VarIant SimulatOR for short, long and linked reads

Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)

🗨️ Nextcloud Talk – chat, video & audio calls for Nextcloud

A presenter console with multi-monitor support for PDF files.

Peregrine: Fast Genome Assembler Using SHIMMER Index

Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…

SV caller for nanopore data

A snakemake pipeline for SV analysis from nanopore genome sequencing

Structural variant caller

Functions to compare a SV call sets against a truth set.

Visualize how reads align to a reference