Abort stalled o3 autofocus #203
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jeskesen
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Oct 29, 2025
* Update author metadata labeling in CITATION.cff (#188) Update author metadata format in CITATION.cff * Add CLI to stir plate before acquisition (#189) * add stir_plate CLI * docs and check for empty pos list * use logging instead of click.echo * style * Autoexposure safety checks (#190) * check min exp time * check for demo mode after validating illumination.csv file * bugfixes and extensions * bugfix * style * Abort stalled o3 autofocus (#203) * abort stalled O3 autofocus * add note on hardcoded value * O3 autofocus improvements (#204) * add extra logging and make sure O3 will not run outside of travel range * fix bug in galvo positioning during o3 refocus * set o3 stage position at beginning of new acquisition * merge implementation * enable LS by default * uncomment and connect update_ls_hardware * modified update_ls_hardware to get the channel index from an MDAEvent * ran black * added channel list back into args of update_ls_hardware * update_ls_hardware finally works * appeasing the style gods * yet more appeasing the style gods, this time isort --------- Co-authored-by: Mandy Chen <[email protected]> Co-authored-by: Ivan Ivanov <[email protected]>
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