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This PR adds safety checks when doing manual autoexposure

  • Load csv file as pandas dataframe and check that it has the correct columns
  • Check that the requested exposure time is below the minimal for the camera/acquisition
  • Check that illumination settings are provided for all wells in the MM position list

@ieivanov ieivanov merged commit 6e6cb1c into main Jul 31, 2025
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@ieivanov ieivanov deleted the check_min_exp_time branch July 31, 2025 22:23
jeskesen added a commit that referenced this pull request Aug 12, 2025
* Update author metadata labeling in CITATION.cff (#188)

Update author metadata format in CITATION.cff

* Add CLI to stir plate before acquisition (#189)

* add stir_plate CLI

* docs and check for empty pos list

* use logging instead of click.echo

* style

* Autoexposure safety checks (#190)

* check min exp time

* check for demo mode after validating illumination.csv file

* bugfixes and extensions

* bugfix

* style

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Co-authored-by: Mandy Chen <[email protected]>
Co-authored-by: Ivan Ivanov <[email protected]>
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