The open source coding agent.

PureTarget Carrier Pipeline (PTCP)

Safe Rust wrapper around the abPOA partial order aligner

Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library

A structural variant filtering and prioritization tool for long-read sequencing data

Plotlars is a Rust library designed to facilitate the integration between the Polars data analysis library and Plotly library.

A "dot"-plot style viewer for .1aln files

Fast Tandem Repeat Finder

Pairwise whole genome aligner

Tools for manipulating sequence graphs in the GFA and rGFA formats

Graphical Fragment Assembly (GFA) Format Specification

Fast sequence distance estimates

Split k-mer analysis – version 2

A local-haplotagging-based small and structural variant caller

Python 3.8+ toolbox for submitting jobs to Slurm

A unified framework for data analysis with GLM/GLMM in R

Structural variation merging

Tools for human X-inactivation skew analysis

Location for some reusable GitHub workflows

Probabilistic reasoning and statistical analysis in TensorFlow

Utilities for building and managing bioconda recipes

A thin rust wrapper around libhmmer

Transfer HiFi read mappings from their own assembly contigs to a standard reference