This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

A minimap2 frontend for PacBio native data formats

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

Conda recipes for the bioconda channel.

SIMD pairwise sequence alignment

Rust bindings for the Parasail C library

Structural variant toolkit for VCFs

Rust binding for WFA2-lib

WFA2-lib: Wavefront alignment algorithm library v2

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

A rust wrapper for the spoa C++ partial order alignment library

Safe interop between Rust and C++

A VCF comparison engine for structual variant benchmarking

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

A tool for estimating repeat sizes

R for data science: a book

Strelka2 germline and somatic small variant caller

A collection of lua filters for pandoc

A lightweight parallel task engine

Updated figures for "A benchmarking of WGS-based structural variant callers" paper

Structural variant and indel caller for mapped sequencing data

Specifications of SAM/BAM and related high-throughput sequencing file formats

C library for high-throughput sequencing data formats