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Starred repositories

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CRAN as Ubuntu Binaries

R 322 18 Updated Oct 31, 2025

A completion plugin for neovim coded in Lua.

Lua 9,170 431 Updated Oct 30, 2025

Portable package manager for Neovim that runs everywhere Neovim runs. Easily install and manage LSP servers, DAP servers, linters, and formatters.

Lua 9,678 319 Updated Oct 1, 2025

Find, Filter, Preview, Pick. All lua, all the time.

Lua 18,510 921 Updated Oct 28, 2025

💤 A modern plugin manager for Neovim

Lua 19,283 501 Updated Oct 28, 2025

An incremental parsing system for programming tools

Rust 22,564 2,164 Updated Oct 30, 2025

Nvim Treesitter configurations and abstraction layer

Tree-sitter Query 12,753 1,051 Updated Oct 30, 2025

Removes large or troublesome blobs like git-filter-branch does, but faster. And written in Scala

Scala 11,807 571 Updated Jan 19, 2025

Chai-1, SOTA model for biomolecular structure prediction

Python 1,799 252 Updated Sep 5, 2025

Mummer alignment tool

C++ 532 111 Updated Feb 4, 2025

RNA-seq aligner

C 2,067 537 Updated Mar 18, 2025

Reads simulator

C 282 92 Updated Sep 3, 2021

Align proteins to genomes with splicing and frameshift

C 382 21 Updated Sep 20, 2025

Automatically exported from code.google.com/p/figtree

Java 441 114 Updated Jun 25, 2025

An extremely fast Python package and project manager, written in Rust.

Rust 71,641 2,183 Updated Nov 1, 2025

HMMER: biological sequence analysis using profile HMMs

C 386 84 Updated Sep 26, 2025

Python 3 library with good support for both reading and writing VCF

Python 110 23 Updated Oct 2, 2025

A Variant Call Format reader for Python.

Python 417 198 Updated Sep 22, 2023

a simple template to write your CV in a readable markdown file and use CSS to publish/print it.

CSS 1,449 3,370 Updated Jun 27, 2024

A "batteries-included" distribution of ImageJ 🔋

Shell 883 248 Updated Oct 15, 2025

Genome-scale protein function classification

Java 351 75 Updated Oct 27, 2025

Tigerfish

HTML 11 2 Updated Jan 30, 2024

Genome-scale design tool for oligo hybridization probes

Python 66 23 Updated May 19, 2021

🌈Rainbow CSV - Vim plugin: Highlight columns in CSV and TSV files and run queries in SQL-like language

Python 685 27 Updated Oct 4, 2025

Accurate sample inference from amplicon data with single nucleotide resolution

R 523 157 Updated Jul 15, 2025

TEtrimmer: a novel tool to automate manual curation of transposable elements

Python 103 4 Updated Oct 31, 2025

Toolkit for evolutionary analyses of linkage groups

Python 32 3 Updated Jul 17, 2024

Find, circularise and annotate mitogenome from PacBio assemblies

Python 189 31 Updated May 11, 2025

Synteny and Rearrangement Identifier

Cython 420 41 Updated Apr 29, 2025

Select primer sets for selective whole genome amplification (SWGA)

C++ 32 13 Updated Mar 26, 2019
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