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delfies Public
Querying genomes for evidence of Programmed DNA Elimination
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snakefmt Public
Forked from snakemake/snakefmtThe uncompromising Snakemake code formatter
Python MIT License UpdatedSep 3, 2025 -
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedMar 5, 2025 -
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Acanthophis Public
Forked from kdm9/AcanthophisA comprehensive, opinionated plant variant calling pipeline in Snakemake
TeX Mozilla Public License 2.0 UpdatedFeb 20, 2024 -
nf-core-configs Public
Forked from l-modolo/nf-core-configsConfig files used to define parameters specific to compute environments at different Institutions
Nextflow MIT License UpdatedFeb 2, 2024 -
Ratatosk Public
Forked from DecodeGenetics/RatatoskHybrid error correction of long reads using colored de Bruijn graphs
C++ BSD 2-Clause "Simplified" License UpdatedJan 10, 2024 -
TE-Aid Public
Forked from clemgoub/TE-AidAnnotation helper tool for the manual curation of transposable element consensus sequences
R UpdatedDec 22, 2023 -
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seqkit Public
Forked from shenwei356/seqkitA cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
Go MIT License UpdatedDec 6, 2023 -
purge_dups Public
Forked from dfguan/purge_dupshaplotypic duplication identification tool
C MIT License UpdatedJun 6, 2023 -
snakemake Public
Forked from snakemake/snakemakeThis is the development home of the workflow management system Snakemake. For general information, see
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scipy Public
Forked from scipy/scipySciPy library main repository
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 2, 2022 -
MosaicAligner Public
Forked from kvg/MosaicAlignerGil's HMM-based alignment/recombination software from Zilversmit et al. 2013.
C UpdatedJun 23, 2022 -
genomepy Public
Forked from vanheeringen-lab/genomepygenes and genomes at your fingertips
Python MIT License UpdatedJun 21, 2022 -
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lsf Public
Forked from Snakemake-Profiles/lsfSnakemake profile for running jobs on an LSF cluster
Python MIT License UpdatedMar 9, 2021 -
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gramtools Public
Forked from iqbal-lab-org/gramtoolsGenome inference from a population reference graph
C++ UpdatedJan 7, 2021 -
phd-thesis-template Public
Forked from kks32/phd-thesis-templateA LaTeX / XeLaTeX / LuaLaTeX PhD thesis template for Cambridge University Engineering Department (CUED)
TeX Other UpdatedJan 4, 2021 -
make_prg Public
Forked from iqbal-lab-org/make_prgCode to create a PRG from a Multiple Sequence Alignment file
Python Other UpdatedDec 7, 2020 -
GCP Public
Forked from leoisl/GCPGenotype confidence percentile header-only c++ implementation
C++ UpdatedMay 29, 2020 -
py-cortex-api Public
Forked from iqbal-lab-org/py-cortex-apiPython API for cortex
Python UpdatedMay 5, 2020 -
googletest Public
Forked from google/googletestGoogletest - Google Testing and Mocking Framework
C++ BSD 3-Clause "New" or "Revised" License UpdatedApr 22, 2020 -
research-software Public
Forked from EBI-predocs/research-software💻 Instructions, tips and issue tracker for the software on the EBI computing cluster
Shell UpdatedMar 22, 2020 -
minos Public
Forked from iqbal-lab-org/minosVariant call adjudication
Python MIT License UpdatedJan 15, 2020
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