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krepp Public
A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.
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shared.krepp Public
Results used in the krepp paper and some scripts to analyze them.
HTML UpdatedOct 9, 2025 -
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ASTER Public
Forked from chaoszhang/ASTERAccurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)
C++ GNU Affero General Public License v3.0 UpdatedSep 13, 2025 -
open-data-registry Public
Forked from awslabs/open-data-registryA registry of publicly available datasets on AWS
Python Apache License 2.0 UpdatedAug 24, 2025 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedAug 18, 2025 -
wol Public
Forked from biocore/wolReference Phylogeny for Bacterial and Archaeal Genomes
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedAug 9, 2025 -
pasta Public
Forked from smirarab/pastaPASTA (Practical Alignment using SATe and Transitivity)
Python GNU General Public License v3.0 UpdatedJun 13, 2025 -
MuDCoD Public
MuDCoD: Multi-subject Dynamic Community Detection
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TreeSwift Public
Forked from niemasd/TreeSwiftTreeSwift: Fast tree module for Python 3
Python GNU General Public License v3.0 UpdatedMar 11, 2025 -
KRANK Public
Memory-bound taxonomic identification with evolutionary diverse databases.
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basty Public
basty (Automated Behavioral Analysis of Asleep Fruit Fly) is a software designed to analyze behavioral correlates of sleep in Drosophila Melanogaster.
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anelfop Public
Focusing on potential named entities during active label acquisition.
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skimming_scripts-echarvel Public
Forked from echarvel3/skimming_scripts-echarvelscripts for preprocessing/analysis of genome skim data
Java UpdatedMay 29, 2024 -
CONSULT-II Public
Forked from noraracht/CONSULTAccurate taxonomic classification and abundance profiling using locality-sensitive hashing.
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vim-markdown Public
Forked from tpope/vim-markdownVim Markdown runtime files
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cs228-notes Public
Forked from ermongroup/cs228-notesCourse notes for CS228: Probabilistic Graphical Models.
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DeepLabCut Public
Forked from DeepLabCut/DeepLabCutOfficial implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals
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pyenv Public
Forked from pyenv/pyenvSimple Python version management
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bspwm Public
Forked from EndeavourOS-Community-Editions/bspwmEndeavourOS Community Edition setup for BSPWM
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wiki.vim Public
Forked from lervag/wiki.vimA wiki plugin for Vim
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bibtex-tidy Public
Forked from FlamingTempura/bibtex-tidyCleaner and Formatter for BibTeX files
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