mawww's experiment for a better code editor

SPrUCE tool to estimate nucleotide diversity from Ultraconserved elements

A fast approximate aligner for long DNA sequences

Behavioral Observation Research Interactive Software

Compares two latex files and marks up significant differences between them. Releases on www.ctan.org and mirrors

A python parser for jplace (evolutionary placement) files

Continuous saving of tmux environment. Automatic restore when tmux is started. Automatic tmux start when computer is turned on.

Persists tmux environment across system restarts.

Use your Neovim like using Cursor AI IDE!

Joe's Window Manager

Wastewater-Based Epidemiology using Phylogenetic Placements

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

Sinkhorn Barycenters via Frank-Wolfe algorithm

⚡ A Fast, Extensible Progress Bar for Python and CLI

Topology weighting by iterative sampling of sub-trees

Data, scripts, and other resources to accompany murine discordance manuscript

A script to produce an archive tar.gz file of the a git module including all git submodules

Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome

SimPhy: A comprehensive simulator of gene family evolution

k-mer learning materials

A library for working with phylogenetic and population genetic data.

Symmetric DUST for finding low-complexity regions in DNA sequences

multi-dimensional statistical test with python

Color palettes for gnuplot

a lightweight header-only C++17 library of numerical optimization methods for (un-)constrained nonlinear functions and expression templates

A Python package for probabilistic state space modeling with JAX

Pass for iOS - an iOS client compatible with Pass command line application.