Releases: obi-ontology/obi
Releases · obi-ontology/obi
2025-10-14 Release
New terms added:
| ID | Label |
|---|---|
| OBI:0003741 | capillary electrophoresis mass spectrometry assay |
2025-07-28 Release
New terms added:
| ID | Label |
|---|---|
| OBI:0003726 | maximum data transformation |
| OBI:0003727 | minimum data transformation |
| OBI:0003734 | clinical history collection assay |
| OBI:0003735 | disease severity assay |
| OBI:0003736 | genetic characteristic assay |
| OBI:0003738 | blood type assay |
| OBI:0003739 | manual muscle testing 8 score |
| OBI:0003740 | childhood myositis assessment scale score |
| OBI:0004001 | randomized clinical trial |
| OBI:0004002 | non-randomized clinical trial |
This release includes a new obi-cob.owl file that uses COB as the top-level ontology for OBI:
http://purl.obolibrary.org/obo/obi/2025-07-28/obi-cob.owl
We are planning to use COB as the top-level of OBI in the primary obi.owl file starting at the end of October. Ontologies that import from OBI are strongly encouraged to test obi-cob.owl in their workflows as soon as possible.
See #1857 for details on OBI's transition to COB, and leave a comment about your testing: whether it worked or what problems you ran into.
2025-05-01 Release
New terms added:
| ID | Label |
|---|---|
| OBI:0003692 | case-control investigation |
| OBI:0003693 | observational investigation |
| OBI:0003694 | longitudinal investigation |
| OBI:0003695 | nested case-control investigation |
| OBI:0003696 | animal investigation |
| OBI:0003697 | clinical investigation |
| OBI:0003698 | observational clinical investigation |
| OBI:0003699 | clinical trial |
| OBI:0003700 | phase I clinical trial |
| OBI:0003701 | phase II clinical trial |
| OBI:0003702 | phase III clinical trial |
| OBI:0003703 | has study design |
| OBI:0003704 | is study design of |
| OBI:0003705 | study arm design |
| OBI:0003706 | study arm population |
| OBI:0003707 | mortar and pestle device |
| OBI:0003708 | infrared gas analyzer |
| OBI:0003709 | assessment of learning and/or memory response in an organism |
| OBI:0003710 | assessment of startle response in an organism |
| OBI:0003711 | grip strength assay |
| OBI:0003712 | assay of organismal behavior |
| OBI:0003713 | organism development assay |
| OBI:0003714 | reproductive assay |
| OBI:0003715 | vital sign assay |
| OBI:0003716 | blood pressure assay |
| OBI:0003717 | heart rate variability assay |
| OBI:0003718 | pulse rate assay |
| OBI:0003719 | respiratory assay |
| OBI:0003720 | cell differentiation assay |
| OBI:0003721 | cell based DNA damage assay |
| OBI:0003722 | natural killer cell count assay |
| OBI:0003723 | natural killer cell percentage assay |
| OBI:0003724 | sperm count assay |
| OBI:0003725 | survey administration assay |
2025-03-06 Release
New terms added:
| ID | Label |
|---|
2025-01-09 Release
Significant changes:
- The object properties "has_specified_input", "has_specified_output", "is_specified_input_of", and "is_specified_output_of" have been relabelled to remove the underscores.
- We updated our RO Core import, which was very old. There have been two significant label changes in RO: 'inheres in' is now 'characteristic of', and 'bearer of' is now 'has characteristic'.
- We made improvements to the 'specimen' branch in #1839.
New terms added:
| ID | Label |
|---|---|
| OBI:0003412 | linked-read sequencing assay |
| OBI:0003688 | sand bath |
| OBI:0003689 | ice bath |
| OBI:0003690 | dry ice bath |
| OBI:0003691 | liquid nitrogen bath |
2024-12-05 Release
New terms added:
| ID | Label |
|---|---|
| OBI:0003686 | chromatin accessibility assay |
| OBI:0003687 | m6A-MTase sequencing assay |
2024-10-25 Release
New terms added:
| ID | Label |
|---|---|
| OBI:0003683 | Illumina HiSeq Series Instrument |
| OBI:0003684 | Illumina NextSeq Series Instrument |
| OBI:0003685 | Illumina NovaSeq Series Instrument |
2024-10-03 Release
New terms added:
| ID | Label |
|---|---|
| OBI:0003656 | water filtration |
| OBI:0003658 | ring trial design |
| OBI:0003659 | in vitro CRISPR screen assay |
| OBI:0003660 | in vitro CRISPR screen using single-cell RNA-seq |
| OBI:0003661 | in vitro CRISPR screen using flow cytometry |
| OBI:0003662 | single-nucleus methylcytosine and transcriptome sequencing assay |
| OBI:0003663 | Illumina NovaSeq X |
| OBI:0003664 | Illumina NovaSeq X Plus |
| OBI:0003666 | lavage fluid specimen |
| OBI:0003667 | oral lavage fluid |
2024-06-10 Release
This release of OBI imports IAO as a module with selected terms, rather than importing all of IAO (see #1764).
New terms added:
| ID | Label |
|---|---|
| OBI:0003652 | albumin-free serum |
| OBI:0003653 | fasting |
| OBI:0003654 | overnight fasting |
| OBI:0003655 | fasted |
| OBI:0003657 | minimum resolved unit of measurement |
2024-01-09 Release
New terms added:
| ID | Label |
|---|---|
| OBI:0003335 | diffusion weighted magnetic resonance image data set |
| OBI:0003336 | functional magnetic resonance image data set |
| OBI:0003337 | resting state functional magnetic resonance image data set |
| OBI:0003338 | task-based functional magnetic resonance image data set |
| OBI:0003339 | perfusion weighted magnetic resonance image data set |
| OBI:0003340 | proton density magnetic resonance image data set |
| OBI:0003341 | T1 weighted magnetic resonance image data set |
| OBI:0003342 | post-Gd T1 weighted magnetic resonance image data set |
| OBI:0003343 | T1 weighted GRE magnetic resonance image data set |
| OBI:0003344 | high resolution T1 weighted magnetic resonance image data set |
| OBI:0003345 | baseline high resolution T1 weighted magnetic resonance image data set |
| OBI:0003346 | follow-up high resolution T1 weighted magnetic resonance image data set |
| OBI:0003347 | T1 weighted SE magnetic resonance image data set |
| OBI:0003348 | T2 weighted magnetic resonance image data set |
| OBI:0003349 | T2 weighted FLAIR magnetic resonance image data set |
| OBI:0003350 | T2 weighted FSE magnetic resonance image data set |
| OBI:0003351 | T2 weighted SE magnetic resonance image data set |
| OBI:0003352 | T2 weighted STIR magnetic resonance image data set |
| OBI:0003353 | T2* weighted GRE magnetic resonance image data set |
| OBI:0003357 | brain region atlas image data set |
| OBI:0003358 | probabilistic brain region atlas image dataset |
| OBI:0003359 | deterministic brain region atlas image data set |
| OBI:0003360 | image segmentation map |
| OBI:0003361 | lesion mask |
| OBI:0003362 | T1 lesion mask |
| OBI:0003363 | T2 FLAIR lesion mask |
| OBI:0003553 | intragastric administration |
| OBI:0003554 | intracolonic administration |
| OBI:0003555 | vaginal administration |
| OBI:0003556 | topical administration |
| OBI:0003557 | cervical administration |
| OBI:0003558 | conjunctival administration |
| OBI:0003559 | intratracheal administration |
| OBI:0003560 | intra-amniotic administration |
| OBI:0003561 | intra-arterial administration |
| OBI:0003562 | intracerebral administration |
| OBI:0003563 | intracranial administration |
| OBI:0003564 | intraepidermal administration |
| OBI:0003565 | intralymphatic administration |
| OBI:0003566 | lymph node administration |
| OBI:0003567 | urethral administration |
| OBI:0003568 | skin scarification administration |
| OBI:0003569 | intrauteral administration |
| OBI:0003570 | intracarotid administration |
| OBI:0003571 | intraocular administration |
| OBI:0003572 | intraplacental administration |
| OBI:0003573 | intrarectal administration |
| OBI:0003574 | intrasplenic administration |
| OBI:0003575 | scratching |
| OBI:0003603 | intratumoral administration |
| OBI:0003607 | disease causation objective |
| OBI:0003608 | disease severity reduction objective |
| OBI:0003609 | disease prevention objective |
| OBI:0003610 | reactant role |
| OBI:0003611 | precursor role |
| OBI:0003612 | electron microscopy assay determining the 3D structure of a T cell epitope:MHC:TCR complex |
| OBI:0003613 | electron microscopy assay determining the 3D structure of a MHC:ligand complex |
| OBI:0003614 | disease prevalence reduction objective |
| OBI:0003615 | antibody purification of MHC protein complex |
| OBI:0003616 | antibody purification of MHC class I protein complex |
| OBI:0003617 | antibody purification of human MHC class I protein complex |
| OBI:0003618 | antibody purification of HLA protein complex with A2 serotype |
| OBI:0003619 | antibody purification of HLA protein complex with A24 serotype |
| OBI:0003620 | antibody purification of HLA protein complex with A2 serotype and/or HLA protein complex with A28 serotype |
| OBI:0003621 | antibody purification of HLA protein complex with A29 serotype |
| OBI:0003622 | antibody purification of HLA protein complex with B27 serotype |
| OBI:0003623 | antibody purification of HLA-C protein complex |
| OBI:0003624 | antibody purification of pig MHC class I protein complex |
| OBI:0003625 | antibody purification of cattle MHC class I protein complex |
| OBI:0003626 | antibody purification of rat MHC class I protein complex |
| OBI:0003627 | antibody purification of mouse MHC class I protein complex |
| OBI:0003628 | antibody purification of H2-Dd protein complex |
| OBI:0003629 | antibody purification of H2-Db protein complex |
| OBI:0003630 | antibody purification of H2-Kd protein complex |
| OBI:0003631 | antibody purification of H2-Ld protein complex, H2-Db protein complex, and/or H2-Dq protein complex |
| OBI:0003632 | antibody purification of H2-Dd protein complex and/or H2-Kd protein complex |
| OBI:0003633 | antibody purification of mouse MHC class I protein complex with H2-b haplotype and/or mouse MHC protein complex with H2-p haplotype |
| OBI:0003634 | antibody purification of H2-Kb protein complex, H2-Ks protein complex, and/or H2-Kq protein complex |
| OBI:0003635 | antibody purification of pig MHC class I protein complex, cattle MHC class I protein complex, and/or human MHC class I protein complex |
| OBI:0003636 | antibody purification of MHC class II protein complex |
| OBI:0003637 | antibody purification of cattle MHC class II protein complex |
| OBI:0003638 | antibody purification of human MHC class II protein complex |
| OBI:0003639 | antibody purification of HLA-DP protein complex |
| OBI:0003640 | antibody purification of HLA-DR protein complex |
| OBI:0003641 | antibody purification of HLA protein complex with DQ3 serotype |
| OBI:0003642 | antibody purification of mouse MHC class II protein complex |
| OBI:0003643 | antibody purification of H2-IA protein complex |
| OBI:0003644 | antibody purification of H2-IAg7 protein complex |
| OBI:0003645 | antibody purification of H2-IAd protein complex |
| OBI:0003646 | antibody purification of mouse MHC class II protein complex and/or rat MHC class II protein complex with RT1-A haplotype |
| OBI:0003647 | tandem mass spectrometry analysis |
| OBI:0003648 | liquid chromatrography mass spectrometry analysis |
| OBI:0003649 | liquid chromatography-tandem mass spectrometry analysis |
| OBI:0003650 | Illumina Infinium MethylationEPIC v2.0 BeadChip |
| OBI:0003651 | multidimensional fatigue inventory score |