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National Bioinformatics Infrastructure Sweden, SciLife lab, Uppsala University
- Uppsala
- https://mtbioinformatics.wordpress.com/
- @nimra236
- in/nima-rafati-phd-b719a949
- channel/UCAnpW5si2OhdqgV3HLtcn6A
Highlights
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Training-Tech-shorts Public
Forked from NBISweden/Training-Tech-shortsShort lessons, training various Research Software Engineering tools useful to our work.
F* UpdatedOct 6, 2025 -
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awesome-multi-omics Public
Forked from mikelove/awesome-multi-omicsList of software packages for multi-omics analysis
MIT License UpdatedSep 15, 2025 -
minute Public
Forked from elsasserlab/minuteMINUTE-ChIP data analysis workflow
Python MIT License UpdatedAug 4, 2025 -
My_Toolbox Public
This is a repository consisting of codes and materials for My Toolbox in Bioinformatics program.
HTML UpdatedJul 28, 2025 -
scRNASeq_analysis Public
This repository contains a workflow for the analysis of scRNA-seq data.
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workshop-mlbiostatistics Public
Forked from NBISweden/workshop-mlbiostatisticsNBIS ML course
HTML UpdatedJun 12, 2025 -
SNRApp Public
A web app to calculate and visualize the signal-to-noise ratio (SNR) from spatial omics data.
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self-hosted-ai-starter-kit Public
Forked from n8n-io/self-hosted-ai-starter-kitThe Self-hosted AI Starter Kit is an open-source template that quickly sets up a local AI environment. Curated by n8n, it provides essential tools for creating secure, self-hosted AI workflows.
Apache License 2.0 UpdatedMay 30, 2025 -
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Agentic-RAG-with-LangChain Public
Forked from ThomasJanssen-tech/Agentic-RAG-with-LangChainPython MIT License UpdatedApr 27, 2025 -
dataquestio_solutions Public
Forked from dataquestio/solutionsSolutions for projects.
Jupyter Notebook UpdatedJan 15, 2025 -
Lee_2023 Public
Forked from Moldia/Lee_2023All the code described in the Lee et al. (2023) paper
Jupyter Notebook UpdatedNov 25, 2024 -
workshop-r Public
Forked from NBISweden/workshop-rWorkshop • R Programming Foundations for Life Scientists • 5 days
CSS GNU General Public License v3.0 UpdatedOct 27, 2024 -
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biotech-salary-analysis Public
Forked from thom-99/biotech-salary-analysisPython UpdatedSep 2, 2024 -
nichecompass Public
Forked from Lotfollahi-lab/nichecompassEnd-to-end analysis of spatial multi-omics data
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 22, 2024 -
single-cell-best-practices Public
Forked from theislab/single-cell-best-practiceshttps://www.sc-best-practices.org
Jupyter Notebook Other UpdatedJul 16, 2024 -
FigureOneLab Public
Forked from deanslee/FigureOneLabHone computational biology skills by re-enacting Figure 1 of modern biology papers
Jupyter Notebook UpdatedJul 6, 2024 -
Xenium_benchmarking Public
Forked from Moldia/Xenium_benchmarkingCode used to benchmark Xenium
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ttt-elixir-no-2024 Public
Forked from ELIXIR-Norway-Training/ttt-elixir-no-2024Repository for ELIXIR Norway's Train-the-Trainer 2024 Course
UpdatedMay 3, 2024 -
pipex_forked Public
Forked from CellProfiling/pipexA pipeline to transform images into valuable analysis items
Python MIT License UpdatedApr 29, 2024 -
AI-Resume-Analyzer Public
Forked from deepakpadhi986/AI-Resume-AnalyzerAi Resume Analyzer is a tool which parses information from a resume using natural language processing and finds the keywords, cluster them onto sectors based on their keywords. And lastly show reco…
Python MIT License UpdatedApr 9, 2024 -
minitorch Public template
Forked from minitorch/minitorchThe full minitorch student suite.
Python UpdatedMar 1, 2024 -
Qupath_scripts Public
This repository is collection of scripts to work with images
Groovy UpdatedFeb 19, 2024