Stars
Short lessons, training various Research Software Engineering tools useful to our work.
List of software packages for multi-omics analysis
Chat with your documents (pdf, csv, text) using Openai model, LangChain and Chainlit
This repo includes ChatGPT prompt curation to use ChatGPT better.
Hone computational biology skills by re-enacting Figure 1 of modern biology papers
Main folder. Material related to my books on synthetic data and generative AI. Also contains documents blending components from several folders, or covering topics spanning across multiple folders..
Some useful R scripts for SC analysis
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
A conda-smithy repository for datavzrd.
Assignments of the course
https://arxiv.org/abs/2006.04992
Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods
A set of workflows written in Nextflow for Genome Annotation.
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
NBIS workshop in Neural Nets and Deep Learning
Alternative Splicing and Differential Expression Variable Selection for Predictive Phenotype Analysis Package Scripts
A framework for support projects, including templates for reports, data management as well as links to tools and pipelines
genetic variant expressions, annotation, and filtering for great good.
This is the NBIS repository for the Genome Annotation Workshop.