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Pull requests list

Fix collectFile cache issue causing software version inconsistencies
#3654 opened Jul 2, 2025 by ewels • Draft
2 of 4 tasks
1
@ewels
11
Update astral-sh/setup-uv action to v7.1.5
#3970 opened Dec 12, 2025 by renovate bot Loading…
1 task
2
Pipeline template: New pre-commit hooks (large files, merge conflicts)
#3935 opened Nov 26, 2025 by MatthiasZepper Loading…
2 of 4 tasks
17
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps • Draft
4 tasks
3.6.0
11
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller Loading…
@edmundmiller
7
linting: more fixes for incorrect parsing of version statement
#3973 opened Dec 16, 2025 by mashehu Loading…
2
Implement wave container commands
#3954 opened Dec 2, 2025 by JulianFlesch • Draft
4 tasks
@ningyuxin1999
27
Support version topic channels
#3093 opened Aug 1, 2024 by edmundmiller Loading…
4 tasks
@edmundmiller
5
Patch patch command
#3714 opened Aug 15, 2025 by ErikDanielsson Loading…
2 of 4 tasks
@ErikDanielsson
5
Document ext.args in meta yml
#3451 opened Feb 12, 2025 by awgymer Loading…
4 tasks
1
13
linting: fix type error when linting modules.json
#3611 opened Jun 11, 2025 by mashehu Loading…
1
Subworkflow lint bugfixes
#3968 opened Dec 10, 2025 by andresferben Loading…
2 of 4 tasks
2
split subworkflow/test_lint into separate files
#3965 opened Dec 10, 2025 by mashehu Loading…
1
fix the nested list bug that makes email not be delivered
#3081 opened Jul 25, 2024 by HaidYi Loading…
2 of 4 tasks
12
Update GitHub Actions (major)
#3971 opened Dec 13, 2025 by renovate bot Loading…
1 task
2
Use branch-deploy action
#3744 opened Sep 2, 2025 by kevinbackhouse Loading…
4 tasks
3
Update pre-commit hook astral-sh/ruff-pre-commit to v0.14.7
#3943 opened Dec 1, 2025 by renovate bot Loading…
1 task
1
Simplify coverage reporting in pytest.yml
#3934 opened Nov 26, 2025 by mashehu Loading…
1
sync: don't overwrite the defaultBranch if already set in nextflow.config
#3939 opened Nov 27, 2025 by mashehu Loading…
1
Update python:3.14-slim Docker digest to 119fd5b
#3910 opened Nov 19, 2025 by renovate bot Loading…
1 task
4
Update dependency prettier to v3.7.3
#3944 opened Dec 1, 2025 by renovate bot Loading…
1 task
1
Configbuilder: nf-core configs create
#3949 opened Dec 1, 2025 by mirpedrol Loading…
Lint for version captures in modules
#3676 opened Jul 11, 2025 by edmundmiller Loading…
4 tasks
@edmundmiller
27
TEMPLATE: add a fallback for new outputdir parameter
#3798 opened Oct 3, 2025 by mashehu Loading…
2
General: add pytest for get_wf_files
#3725 opened Aug 26, 2025 by mirpedrol Loading… 3.6.0
7
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