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create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools

Status: Draft (not ready).

nf-core/toolsnumber 3261

#3261 In nf-core/tools;

· Joon-Klaps opened on Oct 29, 2024

Migrate to nf-core-utils plugin

Status: Open.

Task

#3685 In nf-core/tools;

· edmundmiller opened on Jul 22, 2025

feat(template): trigger nf-test full run if scripts in bin modified

Status: Open (in progress).

nf-core/toolsnumber 3897

#3897 In nf-core/tools;

· prototaxites opened on Nov 13, 2025

General: add pytest for get_wf_files

Status: Open (in progress).

nf-core/toolsnumber 3725

#3725 In nf-core/tools;

· mirpedrol opened on Aug 26, 2025

add schema to devcontainer.json

Status: Open (in progress).

nf-core/toolsnumber 3908

#3908 In nf-core/tools;

· mashehu opened on Nov 18, 2025

Subworkflow install failure still results in a 0 exit code

bugSomething isn't workingSomething isn't working

Status: Open.

#3044 In nf-core/tools;

· jvfe opened on Jul 1, 2024

Linting a subworkflow meta YML with components not present in the workflow throws a linting error

bugSomething isn't workingSomething isn't working

linting

Status: Open.

#3844 In nf-core/tools;

· prototaxites opened on Oct 21, 2025

PULL_REQUEST_TEMPLATE.md fails files_unchanged linting test depending on local choice of default branch

bugSomething isn't workingSomething isn't working

Status: Open.

#3423 In nf-core/tools;

· alexlyttle opened on Jan 24, 2025