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Starred repositories
Base pair-augmented SE(3)-flow matching for conditional RNA 3D structure generation
A fully open source biomolecular structure prediction model based on AlphaFold3
The simplest, fastest repository for training/finetuning medium-sized GPTs.
Directory bookmarking system - Enhanced cd utilities
Detection of remote homology by comparison of protein language model representations
Fast protein structure searching or your money back
A dataset for training and benchmarking deep learning models for RNA structure prediction
gRNAde: Geometric Deep Learning for 3D RNA inverse design (ICLR 2025 Spotlight)
A private messenger for Windows, macOS, and Linux.
An unofficial Copilot plugin for Emacs.
The official Python library for the OpenAI API
Emacs as your personal AI assistant. Use LLMs such as ChatGPT or LLaMA for text generation or DALL-E and Stable Diffusion for image generation. Also supports speech input / output.
Capture ALL (with a right click) to OrgMode Inbox
RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westhof
Jupyter notebook client in Emacs
Python implementation of the FR3D software for searching and annotating RNA 3D structures
A Python library containing RNA-related bioinformatics functions and classes.
GERONIMO: GEnomic RNA hOmology aNd evolutIonary MOdeling
python3 physicell data output loader.
A Gantt Chart (Calendar) for Org Mode