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rna-structure-playground Public
a repository with hands-on examples demonstrating practical RNA analysis workflows and basic rna-tools (not only) usage, aimed at education and reproducible tutorials.
Jupyter Notebook UpdatedNov 12, 2025 -
rna-tools Public
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
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geekbook Public
G33KB00K3 - fun to read & fun to write -- 🤓 eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://geekbook.rtfd.io = beautiful html generator of your markdown-b…
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emacs-env Public
I've been using Emacs for over 17 (since 2007) years now. This's my config file :-) it might be useful for someone. http://mmagnus.github.io/emacs-env/
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Pocket-Plus-Calibre-Plugin Public
Forked from onlyhavecans/ReadItLater-Calibre-Plugin📚 Modified version of the Calibre plugin for Pocket. Now, you get your articles organized by your Pocket tags, and more!
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R-scape Public
Forked from EddyRivasLab/R-scapeRNA Structural Covariation Above Phylogenetic Expectation
C Other UpdatedJul 3, 2025 -
rna-tools-webserver-engine Public
The light-weight, complete webserver engine used by me for servers: RNA/DNA-protein docking method http://genesilico.pl/NPDock, RNA 3D structure prediction method http://iimcb.genesilico.pl/SimRNAw…
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latex-ref-links-nar Public
This repository provides a simple workflow to prepare BibTeX entries with clickable links for use in LaTeX documents submitted to the *Nucleic Acids Research* (NAR) web server issue.
TeX UpdatedApr 10, 2025 -
rna3db Public
Forked from marcellszi/rna3dbA dataset for training and benchmarking deep learning models for RNA structure prediction
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biopython Public
Forked from biopython/biopythonOfficial git repository for Biopython (originally converted from CVS)
Python Other UpdatedJan 25, 2024 -
orgmode-capture-all Public
Capture ALL (with a right click) to OrgMode Inbox
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homebrew-bio Public
Forked from brewsci/homebrew-bio🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
Ruby Other UpdatedNov 25, 2023 -
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OpenComplex Public
Forked from aqlaboratory/openfoldTrainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Python Apache License 2.0 UpdatedJul 21, 2023 -
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Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip
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pubmex Public
get full paper names for downloaded publications automatically
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PocketX-Calibre-Plugin Public
PocketX-Calibre-Plugin is an experimental version of Pocket-Plus-Calibre-Plugin (send articles from Pocket to your e-reader)
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borg-search Public
Tools search borg archives/repos (also to search big files to remove them)
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EmacsOrgModeClockingXBar Public
see what you are working on with XBar, Conky ;-) [if using emacs/orgmode/clocking] + alternatives
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EvoClustRNA Public
RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io
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RNA Structural Bioinformatics Crash Course & Data Science in Python
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gnome-shell-simple-message Public
Forked from freddez/gnome-shell-simple-messageWrite message on top bar with dconf
JavaScript GNU General Public License v3.0 UpdatedOct 11, 2022 -
emacs-pdb-mode Public
pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing pl…
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boox-wifi-mount-sync Public
boox-wifi-mount-sync - sync or mount your Boox device over WiFi
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