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nothofagus-metabarcoding Public
Scripts associated with the paper 'Ectomycorrhizal fungal communities in andean-patagonian Nothofagus forests'
Python UpdatedJun 23, 2023 -
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maxemil.github.io Public
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
JavaScript MIT License UpdatedNov 28, 2022 -
bistorta-vivipara Public
Scripts and commands for the publication 'Host generalists dominate fungal communities associated with alpine knotweed roots: a study of Sebacinales'
Python GNU General Public License v3.0 UpdatedSep 19, 2022 -
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ALE-pipeline Public
nextflow pipeline to automate analysis using ALE (https://github.com/ssolo/ALE)
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PhyloMagnet Public
screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics
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miniasm Public
Forked from lh3/miniasmUltrafast de novo assembly for long noisy reads (though having no consensus step)
TeX MIT License UpdatedApr 3, 2020 -
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PhyloMagnet-benchmarks Public
Benchmarks for https://github.com/maxemil/PhyloMagnet
Python UpdatedSep 23, 2019 -
Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene…
C++ UpdatedJun 26, 2019 -
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedJan 29, 2019 -
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git-archaeology Public
Forked from coderefinery/DEPRECATED-git-archaeologyLesson on archaeology with Git.
UpdatedNov 30, 2018 -
recPhyloXML Public
Forked from WandrilleD/recPhyloXMLPhyloXML inspired format to represent reconciliations
Python UpdatedOct 11, 2018 -
megan-ce Public
Forked from husonlab/megan-ceMEGAN Community Edition
Java GNU General Public License v3.0 UpdatedMay 8, 2018 -
Biodiversity-pipeline Public
Pipeline to characterize and analyse fungal microbiomes
Groovy MIT License UpdatedFeb 22, 2018 -
FUNGuild Public
Forked from UMNFuN/FUNGuildFUNGuild: parsing OTUs into functional guilds
Python UpdatedSep 11, 2017 -
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