Scripts from the analysis of the human heart failure atlas

Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)

Official Code for QuantAgent

Making Protein folding accessible to all!

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.

基于多智能体LLM的中文金融交易框架 - TradingAgents中文增强版

Implementing a ChatGPT-like LLM in PyTorch from scratch, step by step

Implement a reasoning LLM in PyTorch from scratch, step by step

大模型智能体Agent中文教程，博客代码仓库

Agent Reinforcement Trainer: train multi-step agents for real-world tasks using GRPO. Give your agents on-the-job training. Reinforcement learning for Qwen2.5, Qwen3, Llama, and more!

BioMCP: Biomedical Model Context Protocol

Public repo for rbio, a biologically-informed reasoning model trained on virtual cell models as verifiers

Code & Train Qwen3 From Scratch

A flexible framework for transformer-based analysis of spatial transcriptomics data

AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all levels

A chatbot implementation compatible with MCP (terminal / streamlit supported)

Modeling complex perturbations with CellFlow

Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.

A comprehensive repository for understanding and reproducing the single-cell perturbation data loading pipeline from the Arc Institute's **Virtual Cell Challenge**. This repository documents the co…

State is a machine learning model that predicts cellular perturbation response across diverse contexts

A Python implementation of LangChain's Open-SWE (Software Engineering) agent with multi-agent workflow for automated coding tasks

UniCure: A Foundation Model for Predicting Personalized Cancer Therapy Response