Changeo-O is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). Change-O provides tools for processing the output of V(D)J alignment tools, a…

The Immcantation Portal

Boltz-2 fork that runs on Tenstorrent Blackhole and Wormhole

Methods to predict antibody immunogenicity

🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)

Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning

scripts and facilities for in-silico mutagenesis with FoldX

2025年8月更新，目前国内可用Docker镜像源汇总，DockerHub国内镜像加速列表，🚀DockerHub镜像加速器

Generating dynamic structures through physics-based sampling of trRosettaX2-predicted inter-residue geometries

Humanness of de-novo designed proteins

Parallelizable Gaussian Accelerated Molecular Dynamics

Frankies Scalable, AI-Based Antibody Design Pipeline

Public Release of ProGen3 family of Models

OMEGA code described in "Scalable and cost-efficient custom gene library assembly from oligopools."

ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding

Source code for the reproduction of RibbonFold paper.

This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shot active learning.

🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers.

Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.

Improved antibody structure-based design using inverse folding

Homomer symmetry prediction from protein sequence

predict protein-protein binding affinifty

ChatGPT in PyMOL now!