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Python 11 11 Updated Jun 29, 2023

Advanced Python Mastery (course by @dabeaz)

Python 12,938 2,197 Updated Dec 22, 2025

A markup-based typesetting system that is powerful and easy to learn.

Rust 50,599 1,409 Updated Jan 16, 2026
Jupyter Notebook 10 Updated Jul 9, 2023

Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.

Python 22 8 Updated Dec 24, 2025

Somatic structural variant caller for long-read data

Python 87 9 Updated Nov 14, 2025

Webserver for Planemo Training Development Kit

Python 4 2 Updated May 8, 2024

Clock using time quotes from the literature, based on the work of Jaap Meijers

R 696 130 Updated Mar 28, 2025

Tiling PCR primer scheme definitions

9 4 Updated Sep 4, 2024

A tool to create visual HTML reports from collections of CSV/TSV tables

Rust 663 40 Updated Jan 15, 2026

Carbon Language's main repository: documents, design, implementation, and related tools. (NOTE: Carbon Language is experimental; see README)

C++ 33,615 1,513 Updated Jan 17, 2026

A collection of modern/faster/saner alternatives to common unix commands.

32,709 820 Updated Sep 10, 2024

For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.

Ruby 91 58 Updated Jan 16, 2026

Galaxy Workflows maintained by the Intergalactic Workflow Commission

Vue 44 84 Updated Jan 15, 2026

Matrix Corporal: reconciliator and gateway for a managed Matrix server

Go 155 15 Updated Nov 20, 2025

A curated list of awesome public Galaxy histories

1 Updated Jun 19, 2021

A collection of Galaxy-related training material

HTML 344 1,036 Updated Jan 17, 2026

ENA upload cli - script your Open Data upload to the European Nucleotide Archive

Python 29 17 Updated Oct 20, 2025
Python 9 2 Updated Apr 14, 2021

Tool Shed repositories maintained by the Intergalactic Utilities Commission

HTML 185 496 Updated Jan 15, 2026

Data intensive science for everyone.

Python 1,720 1,124 Updated Jan 17, 2026

HyPhy: Hypothesis testing using Phylogenies

HyPhy 248 70 Updated Jan 12, 2026

Collection of scripts for automated SARS-CoV-2 genome surveillance.

Python 24 8 Updated Sep 19, 2023

Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.

Python 20 8 Updated Dec 13, 2021

Python library for RO-Crate

Python 79 33 Updated Jan 15, 2026

Lifterover copy number segments in whole

Python 23 4 Updated Feb 6, 2024

Simple, lightweight, and magic-free static site/blog generator for Python coders

Python 1,877 303 Updated Mar 4, 2023

This not my project, just an old fork. Upstream is here

Rust 8 Updated May 4, 2019

Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

Jupyter Notebook 128 77 Updated Feb 3, 2023
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