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@ekg ekg commented Aug 1, 2024

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ekg commented Aug 5, 2024

This allows us to split long mappings which have been merged. Filtering still occurs in the space of merged mappings. This allows our alignment phase to be much thriftier, as it lives closer to the main diagonal of the mapping. wfmash -P 50k works quite well in tests.

@ekg ekg merged commit 13882fe into main Aug 5, 2024
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2 participants