Stars
Seurat meets tidyverse. The best of both worlds.
An rmarkdown template for preparing a PhD thesis at the University of British Columbia
Repository that produces the STAT 545 @ UBC website
Code and plots for submissions to the #tidytuesday challenge
A collection of functions for working with DNA methylation microarrays (quality control, pre-processing, LC estimation, ...)
Most commonly used git tips and tricks.
This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representing a mixture of such cell-types. Inference proceeds via one o…
Dimensionality reduction, clustering, and differential expression tutorial using single-cell RNA-seq data
10xGenomics CellRanger - Slurm Job Partitioner (SJP)
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
A topic-centric list of HQ open datasets.
R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
A Practical (And Opinionated) Guide To Analyzing 450K Data