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  • Cambridge, MA, USA

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Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

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Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

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  • haplogrep3 Public

    Forked from genepi/haplogrep3

    Free mtDNA Haplogroup Classification Service

    Java MIT License Updated Oct 23, 2024

  • gatk Public

    Forked from broadinstitute/gatk

    Official code repository for GATK versions 4 and up

    Java Other Updated Feb 6, 2023

  • warp Public

    Forked from broadinstitute/warp

    WDL Analysis Research Pipelines

    WDL 1 BSD 3-Clause "New" or "Revised" License Updated Apr 14, 2021

  • haplocheckCLI Public

    Forked from leklab/haplocheckCLI

    If I have time will do a revamp of this repo so that is easier to the eyes of a Software Engineer.

    Java Updated Jan 13, 2020

  • jGSL Public

    Pure Java implementation of the GNU Scientific Library

    GNU General Public License v2.0 Updated Oct 6, 2018

  • Hadoop-BAM Public

    Forked from HadoopGenomics/Hadoop-BAM

    Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

    Java MIT License Updated Sep 25, 2017

  • bwa Public

    Forked from lh3/bwa

    Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

    C GNU General Public License v3.0 Updated Jul 27, 2017

  • jbwt Public

    BWT related tools in Java.

    Java Updated Mar 9, 2017

  • jargon Public

    Collection of mathematical recipes transcribed into Java.

    Java GNU General Public License v2.0 Updated Oct 19, 2016

  • tls Public

    Total least squares R package

    R 1 Updated Aug 23, 2014

  • gcadjust Public

    R module to adjust coverage depth bias due to differences in GC content across regions.

    JavaScript Updated Jan 12, 2013

  • maltools Public

    Tools developed for managing Malaria genetic data.

    Perl GNU General Public License v3.0 Updated Nov 23, 2012

  • FLGCA Public

    R package for fragment-length and GC bias analysis in Illumina WGS data

    R Updated Nov 1, 2012

  • lineRatio Public

    A small R module to calculate the ratio of two lines expressed as a set of points.

    R Updated Sep 20, 2012