Search results

vg filter cannot detect nodes field from gam file

Status: Open.

#4733 In vgteam/vg;

· cwatt opened on Oct 30, 2025

VG augment for pggb downstream analysis

Status: Open.

#4728 In vgteam/vg;

· wangzeng2001 opened on Oct 28, 2025

vg autoindex crashed trying to index a graph with oversized snarls

Status: Open.

#4724 In vgteam/vg;

· faithokamoto opened on Oct 24, 2025

Giraffe stuck forever on some hifi reads on specific pangenomes

Status: Open.

#4719 In vgteam/vg;

· leone93 opened on Oct 20, 2025

Release vg v1.70.0

Status: Open.

#4718 In vgteam/vg;

· adamnovak opened on Oct 16, 2025

· 

v1.70.0

Some snarls are missed after normalizing the input vg file

Status: Open.

#4710 In vgteam/vg;

· daanishmahajan opened on Oct 6, 2025

Graph distance logic for skipping repetitive anchors in Giraffe doesn't account for the anchor length itself

Status: Open.

#4701 In vgteam/vg;

· adamnovak opened on Sep 17, 2025

How to build an index for an mpmap without using VCF and FASTA files

Status: Open.

#4691 In vgteam/vg;

· xiaoxinhan opened on Sep 4, 2025

vg giraffe runs unusually slowly on Illumina paired-end reads on one user's system

Status: Open.

#4687 In vgteam/vg;

· upsm-123 opened on Aug 27, 2025

Distanceless distance indexing is very slow

Status: Open.

#4681 In vgteam/vg;

· xchang1 opened on Aug 19, 2025

Reduced recall due to low MAPQ after surjecting long-read graph alignments to GRCh38

Status: Open.

#4675 In vgteam/vg;

· matthewglasenapp opened on Aug 7, 2025

vg call Hanging on a Few Samples

Status: Open.

#4671 In vgteam/vg;

· GooLey1025 opened on Aug 5, 2025