Shapley Interactions and Shapley Values for Machine Learning

Java library to compute radiomics features.

# White Matter Hyperintensities (WMH) segmentation with a 3D Unet

Tractography learning

Scripts for "General Additive Models Address Statistical Issues in Diffusion MRI: An example with clinically anxious adolescents".

BERT models for Japanese text.

Jupyter notebooks for the Natural Language Processing with Transformers book

VISTASOFT is the main software repository of the VISTA lab at Stanford University.

Automated Fiber Quantification

Academic Presentation Slides with Marp

niimath - a clone of fslmaths. Try the live demo:

Samples to evaluate alternative to FSL's distancemap tool

THIS SOFTWARE HAS MOVED!

R package for performing 2-sample MR using IEU OpenGWAS database

Open MS Data

Example docker containers for the WMH Segmentation Challenge

Machine learning for NeuroImaging in Python

Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.

A jquery-like library for python

SPM (Statistical Parametric Mapping) - Development Version

This app will align a T1w image to the ACPC plane (specifically, the MNI152_T1_1mm template from FSL using a 6 DOF alignment via FSL commands. This protocol was adapted from the HCP Preprocessing P…

Processing pipelines for the HCP

Preprocessing of diffusion MRI

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Flexible DICOM conversion into structured directory layouts

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medi…

U-Net Studio