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Merged
merged 8 commits into from
Jan 12, 2023
Merged

CI: Update azurepipelines jobs #597

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a1cf529
CI: Disable CUDA CI while unavailable
carterbox Jan 10, 2023
5091fda
CI: Use libmamba solver and use pytest-cov
carterbox Jan 10, 2023
ee96c67
CI: Update conda in CI
carterbox Jan 11, 2023
c53dd49
CI: Use mamba directly for environment solves
carterbox Jan 11, 2023
7faa608
CI: Build with MKL too on CI
carterbox Jan 11, 2023
560cff1
CI: Use conda-forge channel
carterbox Jan 11, 2023
4ac65c2
CI: Bootstrap mamba into fresh environment
carterbox Jan 11, 2023
61bcfed
CI: Update to python 38
carterbox Jan 11, 2023
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104 changes: 52 additions & 52 deletions azure-pipelines.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -16,47 +16,49 @@ trigger:

jobs:

- job: CUDA_Linux
pool:
name: Default
demands:
- CUDA_VERSION
- Agent.OS -equals Linux
strategy:
matrix:
Python37:
python.version: '37'
maxParallel: 4
steps:
- script: echo "CUDA version is $(CUDA_VERSION)"
displayName: Print CUDA version
- script: >
conda update --yes --quiet
-n base conda
displayName: Update conda
- script: >
conda env remove --yes
-n tomopy
displayName: Remove existing build environment
- script: >
conda env create --quiet --force
-n tomopy
-f envs/linux-$(python.version).yml
displayName: Create build environment
- script: conda list -n tomopy
displayName: List build environment
- script: |
source activate tomopy
pip install . --no-deps
cmake -S . -B build -GNinja -DCMAKE_INSTALL_PREFIX=$CONDA_PREFIX -DCMAKE_BUILD_TYPE=Release
cmake --build build
cmake --install build
displayName: Setup and install
- script: |
source activate tomopy
export CUDA_VERSION="$(CUDA_VERSION)"
pytest test -v
displayName: Run tests
# NO CUDA RUNNER AVAILABLE
# - job: CUDA_Linux
# pool:
# name: Default
# demands:
# - CUDA_VERSION
# - Agent.OS -equals Linux
# strategy:
# matrix:
# Python38:
# python.version: '38'
# maxParallel: 4
# steps:
# - script: echo "CUDA version is $(CUDA_VERSION)"
# displayName: Print CUDA version
# - script: |
# conda update --yes --quiet -n base conda
# conda install -n base conda-libmamba-solver
# conda config --set solver libmamba
# displayName: Update conda
# - script: >
# conda env remove --yes
# -n tomopy
# displayName: Remove existing build environment
# - script: >
# conda env create --quiet --force
# -n tomopy
# -f envs/linux-$(python.version).yml
# displayName: Create build environment
# - script: conda list -n tomopy
# displayName: List build environment
# - script: |
# source activate tomopy
# pip install . --no-deps
# cmake -S . -B build -GNinja -DCMAKE_INSTALL_PREFIX=$CONDA_PREFIX -DCMAKE_BUILD_TYPE=Release
# cmake --build build
# cmake --install build
# displayName: Setup and install
# - script: |
# source activate tomopy
# export CUDA_VERSION="$(CUDA_VERSION)"
# pytest --cov tomopy test -v
# displayName: Run tests

- job: Linux
pool:
Expand All @@ -65,6 +67,8 @@ jobs:
matrix:
Python-nomkl:
python.version: 'nomkl'
Python-38:
python.version: '38'
maxParallel: 4
steps:
- bash: echo "##vso[task.prependpath]$CONDA/bin"
Expand All @@ -83,16 +87,16 @@ jobs:
displayName: Setup and install
- script: |
source activate tomopy
pytest test -v
pytest --cov=tomopy test -v
displayName: Run tests

- job: macOS
pool:
vmImage: 'macOS-latest'
strategy:
matrix:
Python37:
python.version: '37'
Python-38:
python.version: '38'
maxParallel: 4
steps:
- bash: echo "##vso[task.prependpath]$CONDA/bin"
Expand All @@ -113,16 +117,16 @@ jobs:
displayName: Setup and install
- script: |
source activate tomopy
pytest test -v
pytest --cov=tomopy test -v
displayName: Run tests

- job: Windows
pool:
vmImage: 'windows-latest'
strategy:
matrix:
Python37:
python.version: '37'
Python-38:
python.version: '38'
maxParallel: 4
steps:
- powershell: Write-Host "##vso[task.prependpath]$env:CONDA\Scripts"
Expand All @@ -141,9 +145,5 @@ jobs:
displayName: Setup and install
- script: |
call activate tomopy
coverage run --source tomopy -m pytest test -v
pytest --cov=tomopy test -v
displayName: Run tests
- script: |
call activate tomopy
coverage report -m
displayName: Report coverage
11 changes: 5 additions & 6 deletions envs/linux-37.yml → envs/linux-38.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,28 +2,27 @@ name: tomopy
channels:
- conda-forge
dependencies:
- c-compiler
- cmake
- cxx-compiler
- dxchange
- git
- h5py
- importlib_metadata # backport for python<3.8
- ninja
- numexpr
- numpy<1.22.4|>=1.23.0
- python=3.7
- python=3.8
- pywavelets
- scikit-image>=0.17
- scipy
- setuptools_scm
- setuptools_scm_git_archive
# Optional packages
- coverage!=5.0.2
- pyctest>0.0.10
- timemory=*=py37h* # the nompi build
- gxx_linux-64<=8 # CUDA=10 requires gcc<8
# - pyctest>0.0.10
# - timemory=*=py37h* # the nompi build
- mkl
- mkl-devel
- mkl_fft
- opencv>=3.4
- pytest
- pytest-cov
10 changes: 5 additions & 5 deletions envs/linux-nomkl.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,25 +2,25 @@ name: tomopy
channels:
- conda-forge
dependencies:
- c-compiler
- cmake
- cxx-compiler
- dxchange
- git
- h5py
- importlib_metadata # backport for python<3.8
- ninja
- numexpr
- numpy<1.22.4|>=1.23.0
- python=3.7
- python=3.8
- pywavelets
- scikit-image>=0.17
- scipy
- setuptools_scm
- setuptools_scm_git_archive
# Optional packages
- coverage!=5.0.2
- pyctest>0.0.10
- timemory=*=py37h* # the nompi build
# - pyctest>0.0.10
# - timemory=*=py37h* # the nompi build
- nomkl
- opencv>=3.4
- pytest
- pytest-cov
8 changes: 4 additions & 4 deletions envs/osx-37.yml → envs/osx-38.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,26 +2,26 @@ name: tomopy
channels:
- conda-forge
dependencies:
- c-compiler
- cmake
- cxx-compiler
- dxchange
- git
- h5py
- importlib_metadata # backport for python<3.8
- ninja
- numexpr
- numpy!=1.22.4
- python=3.7
- python=3.8
- pywavelets
- scikit-image>=0.17
- scipy
- setuptools_scm
- setuptools_scm_git_archive
# Optional packages
- coverage!=5.0.2
- pyctest>0.0.10
# - pyctest>0.0.10
- mkl
- mkl-devel
- mkl_fft
- opencv>=3.4
- pytest
- pytest-cov
6 changes: 3 additions & 3 deletions envs/win-37.yml → envs/win-38.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,25 +2,25 @@ name: tomopy
channels:
- conda-forge
dependencies:
- c-compiler
- cmake
- cxx-compiler
- dxchange
- git
- h5py
- importlib_metadata # backport for python<3.8
- ninja
- numexpr
- numpy!=1.22.4
- python=3.7
- python=3.8
- pywavelets
- scikit-image>=0.17
- scipy
- setuptools_scm
- setuptools_scm_git_archive
# Optional packages
- coverage!=5.0.2
- mkl
- mkl-devel
- mkl_fft
- opencv>=3.4,<4.2
- pytest
- pytest-cov
8 changes: 4 additions & 4 deletions envs/win-nomkl.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,23 +2,23 @@ name: tomopy
channels:
- conda-forge
dependencies:
- c-compiler
- cmake
- cxx-compiler
- dxchange
- git
- h5py
- importlib_metadata # backport for python<3.8
- ninja
- numexpr
- numpy!=1.22.4
- python=3.7
- python=3.8
- pywavelets
- scikit-image>=0.17
- scipy
- setuptools_scm
- setuptools_scm_git_archive
# Optional packages
- coverage!=5.0.2
# Optional packages
- nomkl
- opencv>=3.4
- pytest
- pytest-cov