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Mamba-UNet Zoo

Python 736 62 Updated Sep 13, 2024

AI Toolkit for Healthcare Imaging

Python 7,453 1,341 Updated Nov 14, 2025

Loss Functions in the Era of Semantic Segmentation: A Survey and Outlook

Python 69 8 Updated Dec 12, 2023

FastAPI framework, high performance, easy to learn, fast to code, ready for production

Python 91,967 8,230 Updated Nov 13, 2025

[WIP] Resources for AI engineers. Also contains supporting materials for the book AI Engineering (Chip Huyen, 2025)

Jupyter Notebook 11,258 1,628 Updated Feb 12, 2025

Resources to learn AI

451 46 Updated Oct 23, 2025

Replace 'hub' with 'ingest' in any GitHub URL to get a prompt-friendly extract of a codebase

Python 13,089 976 Updated Nov 16, 2025

This is an official implementation for "Swin Transformer: Hierarchical Vision Transformer using Shifted Windows".

Python 15,427 2,194 Updated Jul 24, 2024

Free, simple, fast interactive diagrams for any GitHub repository

TypeScript 14,718 1,104 Updated May 26, 2025
Python 151 26 Updated Dec 20, 2024
R 127 26 Updated Feb 11, 2024

This repository is mainly dedicated for listing the recent research advancements in the application of Self-Supervised-Learning in medical images computing field

158 15 Updated Aug 1, 2024

Graph Attention Networks (https://arxiv.org/abs/1710.10903)

Python 3,455 672 Updated Apr 9, 2022

Representation learning on large graphs using stochastic graph convolutions.

Python 3,625 847 Updated Aug 4, 2024

PyTorch code for Vision Transformers training with the Self-Supervised learning method DINO

Python 7,296 1,008 Updated Jul 3, 2024

A novel machine learning pipeline to analyse spatial transcriptomics data

Python 235 29 Updated Oct 30, 2025

Bayesian Analytics for Spatial Segmentation

C++ 30 11 Updated May 4, 2025

SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network

Python 244 63 Updated Oct 11, 2023

Collection of publicly available spatial transcriptomes

R 6 4 Updated Dec 14, 2020

High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)

Python 19 4 Updated Jul 24, 2024

A curated repository designed to serve as a comprehensive guide for researchers interested in the intersection of Transformer models and genomics. This repository compiles key academic papers that …

Python 26 3 Updated Dec 18, 2024

🧑‍🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), ga…

Python 64,306 6,517 Updated Nov 11, 2025

The official project website of "Omni-Dimensional Dynamic Convolution" (ODConv for short, spotlight in ICLR 2022).

Python 330 30 Updated Sep 6, 2023

Benchmarking clustering, alignment, and integration methods for spatial transcriptomics

Jupyter Notebook 23 2 Updated Dec 19, 2024

Official Implementation of "ADOPT: Modified Adam Can Converge with Any β2 with the Optimal Rate"

Jupyter Notebook 426 20 Updated Dec 12, 2024

Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.

R 160 26 Updated Jul 15, 2025

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

Python 241 25 Updated Jul 8, 2024
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