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geff Public
Forked from live-image-tracking-tools/geffReference implementation of the Graph Exchange File Format
Python MIT License UpdatedNov 12, 2025 -
TrackMate-DeLTA2 Public
Integration of the Delta2 tracking tool into TrackMate
Java GNU General Public License v3.0 UpdatedJan 31, 2025 -
mastodon-yolo Public
A Mastodon detector based on YOLO integration.
BSD 2-Clause "Simplified" License UpdatedNov 11, 2024 -
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mastodon-bvv Public
Mastodon-BVV – 3D visualization for images and tracking data in mastodon.
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trackastra Public
Forked from weigertlab/trackastra -
omnipose Public
Forked from kevinjohncutler/omniposeOmnipose: a high-precision solution for morphology-independent cell segmentation
Jupyter Notebook Other UpdatedJun 12, 2024 -
Perona & Malik anisotropic diffusion for Icy using ImgLib2
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labkit-ui Public
Forked from juglab/labkit-uiAdvanced Tool for Labeling And Segmentation
Java BSD 2-Clause "Simplified" License UpdatedSep 10, 2023 -
matlab-tree Public
A MATLAB class to represent the tree data structure.
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clij-parent-pom Public
Forked from clij/clij-parent-pomBSD 3-Clause "New" or "Revised" License UpdatedJun 3, 2023 -
mastodon-mesh Public
Playground to see if a Mesh implementation using Mastodon is useful.
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elephant-client Public
Forked from elephant-track/elephant-clientA client implementation of ELEPHANT
Java BSD 2-Clause "Simplified" License UpdatedDec 12, 2022 -
CircleSkinner Public
A Fiji plugin for the automated detection and quantification of circular structure in images.
Java BSD 2-Clause "Simplified" License UpdatedNov 14, 2022 -
ProjectEulerJYT Public
My (JYT) Python solutions to the Euler Project problems (https://projecteuler.net/)
Python UpdatedOct 17, 2022 -
clij2-plugin-template Public template
Forked from clij/clij2-plugin-templateJava UpdatedFeb 14, 2022 -
DeformingMesh3D-plugin Public
Forked from PaluchLabUCL/DeformingMesh3D-pluginAn imagej/fiji plugin for interactive segmentation of 3D
Java MIT License UpdatedFeb 11, 2022 -
latex-auto-template Public template
Template repo made for elaborating LaTeX documents that are automatically compiled and published with github actions.
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TrackMate-TrackAnalysis Public archive
Basic track analysis, plugged as TrackMate modules.
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fmi-trackmate-addons Public
Forked from fmi-faim/fmi-trackmate-addonsAddons for TrackMate in ImageJ
Java UpdatedSep 24, 2021 -
TrackMate-extras Public archive
Some extra modules for TrackMate
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KymographTracker Public
Icy KymographTracker.
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msdanalyzer Public
A MATLAB class for Mean Square Displacement analysis.
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stardist-icy Public
Forked from stardist/stardist-icyStarDist plugin for Icy.
Java UpdatedJan 4, 2021 -
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TubeSkinner Public
TubeSkinner: An Icy plugin to unwrap 3D fluorescence images of tube-like structures.
Java UpdatedJul 1, 2020 -
neubias-springer-book-2020 Public
Forked from NEUBIAS/neubias-springer-book-2020Code and images for the Springer book: Bioimage Data Analysis Workflows, edited by Kota Miura and Nataša Sladoje
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simpletracker Public
A simple particle tracking algorithm for MATLAB that can deal with gaps.
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