Lists (7)
Stars
Software suite for the automated generation of geographically correct or schematic transit maps.
TEtrimmer: a novel tool to automate manual curation of transposable elements
Python package to study microbial communities using metabolic modeling.
A C++ drop-in replacement of FastQC to assess the quality of sequence read data
CarveMe: genome-scale metabolic model reconstruction
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
A modern and intuitive terminal-based text editor
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
A django/python frontend that uses NCBIs standalone blast to identify Insertion Sequences in genbank files
Three level Amalgamated Likelihood Estimation (TALE): 3-Level reconciliation of host/symbiont/gene trees, and python reimplementation of ALE, 2-level gene/species reconciliation.
Simple and Customizable Tables in `R`
general purpose library for evaluating the likelihood of sequence evolution on trees
Bayesian analysis of genomic sequence data under the multispecies coalescent model
repositioning and resizing of images directly in quarto revealjs slides
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
A versatile pairwise aligner for genomic and spliced nucleotide sequences