Draw Network with Data

Integrative Composable Visualization Framework for ggplot2

🚥 Visualizing publication-quality multiple sequence alignment using ggplot2

FULL v0, Cursor, Manus, Same.dev, Lovable, Devin, Replit Agent, Windsurf Agent, VSCode Agent, Dia Browser & Trae AI (And other Open Sourced) System Prompts, Tools & AI Models.

Collection of awesome LLM apps with AI Agents and RAG using OpenAI, Anthropic, Gemini and opensource models.

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

ggplot extension: options for tailored facets, multiple colourscales and miscellaneous

Collected scripts for Pymol

Parse NCBI taxonomy and accessions to find taxonomic assignments

A grammar of graphics for comparative genomics

Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.

A tool for generating consensus long-read assemblies for bacterial genomes

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

Extract TraDIS ONT reads

Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.

Visualize whole genome alignments as linear maps

Tools and pipelines tailored to using Oxford Nanopores (ONT) reads for metagenomics

Repository containing lists of all published ancient metagenomic (and related) samples and libraries

SourceTracker2

Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes

Gene cluster comparison figure generator

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Visualise and analyse nanopore (ONT) raw signals

Ultra-fast and memory-efficient (meta-)genome assembler

hmmer3 and easel patched to support the 3di alphabet.

MEGAN Community Edition

Accelerated BLAST compatible local sequence aligner.