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scvi-tools Public
Forked from scverse/scvi-toolsDeep probabilistic analysis of single-cell and spatial omics data
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 11, 2025 -
rfa_ntr_time_2025 Public
Repository for analysis of RFamide/NTR scRNA-seq timecourse
UpdatedNov 6, 2025 -
clytia_splice Public
Alternative splicing analysis in clytia hemisphaerica
Jupyter Notebook UpdatedMay 21, 2025 -
perturbCME Public
Testing scripts for length bias model on predicting perturbation responses
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methylVI Public
Forked from suinleelab/methylVIA deep generative model for single-cell methylation data
Python UpdatedApr 22, 2024 -
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monod Public
Forked from pachterlab/monodThe Monod package fits CME models to sequencing data.
Python BSD 2-Clause "Simplified" License UpdatedApr 2, 2024 -
scMDC Public
Forked from xianglin226/scMDCSingle Cell Multi-omics deep clustering
Python Apache License 2.0 UpdatedFeb 10, 2024 -
stochEffects_23 Public
Repository for Stochastic Modeling of Biophysical Perturbation Effects
Jupyter Notebook UpdatedNov 7, 2023 -
Caltech_DATASAI_Neuroscience_23 Public
Forked from cheninstitutecaltech/Caltech_DATASAI_Neuroscience_23A course organized by the Chen Institute for Neuroscience at Caltech on data analysis techniques in neuroscience
Jupyter Notebook UpdatedJul 14, 2023 -
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GFCP_2022 Public
Forked from pachterlab/GFCP_2022RNA velocity validation
Jupyter Notebook BSD 2-Clause "Simplified" License UpdatedNov 4, 2022 -
notears Public
Forked from xunzheng/notearsDAGs with NO TEARS: Continuous Optimization for Structure Learning
Python Apache License 2.0 UpdatedJul 26, 2022 -
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cs4775 Public
Hidden Neural Network Prediction of Cysteine Bonding States for CS 4775
Python UpdatedJan 29, 2022 -
mypy Public
Forked from python/mypyOptional static typing for Python 3 and 2 (PEP 484)
Python Other UpdatedAug 13, 2021 -
python-cheatsheet Public
Forked from labex-labs/python-cheatsheetBasic Cheat Sheet for Python (PDF, Markdown and Jupyter Notebook)
Jupyter Notebook MIT License UpdatedFeb 22, 2021 -
SplitsPy Public
Forked from husonlab/SplitsPyImplements neighbor-net and phylogenetic outlines
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bytesizebio Public
Forked from sbooeshaghi/bytesizebioJupyter Notebook MIT License UpdatedJan 20, 2021 -
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torchnca Public
Forked from kevinzakka/torchncaA PyTorch implementation of Neighbourhood Components Analysis.
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