Stars
Unified emacs interface supporting Claude Code, Gemini CLI, OpenAI Codex and Github Copilot CLI
List of software packages for multi-omics analysis
Outline-indent: Folding text based on indentation (Supersedes legacy packages such as origami.el and yafolding.el)
Automatically toggle Org mode LaTeX fragment previews as the cursor enters and exits them
A Python package for exploring and analysing genetic variation data
Imputation of parental genotypes, inference of sibling IBD segments, family based GWAS, and polygenic score analyses.
R package for working in the UK Biobank Research Analysis Platform (RAP)
Outliner for taking notes and managing to-do lists
A cross-platform command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, C projects.
Draw datasets from within Python notebooks.
Demo GitHub repo for laboratory research
Pretrained neural networks for UK Biobank brain MRI images. SFCN, 3D-ResNet etc.
Emacs helpers to run things from makefiles
Workflow Description Language compiler for the DNAnexus platform
jmonlong / wdl-mode
Forked from zhanxw/wdl-modeWDL (Workflow Description Language) major mode
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Polymode for the Worflow Description Language in Emacs
An emacs mode for handling Dockerfiles
UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).
A demo/example pipeline for analysing wearables data using the RAP.
Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.
Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform