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protocolGromacs Public
Automatic gromacs protocol from preparation to production with ligand parametrization through
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pymol-color-alphafold Public
Forked from cbalbin-bio/pymol-color-alphafold(FORKED) PyMOL extension to color AlphaFold structures by confidence (pLDDT).
Python MIT License UpdatedJan 20, 2025 -
colabfold_singularity Public
Singularity receipe for local colabfold.
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repo for the summer school AI & Biology and Genetics Practical
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Pymol-script-repo Public
Forked from Pymol-Scripts/Pymol-script-repoCollected scripts for Pymol
Python UpdatedSep 5, 2024 -
af2_analysis Public
Forked from samuelmurail/af_analysisAnalysis of alphafold and colabfold results - FORK for update
Jupyter Notebook GNU General Public License v2.0 UpdatedJul 11, 2024 -
TTClust Public
clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)
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FORK-MolecularNodes Public
Forked from BradyAJohnston/MolecularNodesFORK : Addon and nodes for working with structural biology and molecular data in Blender.
Python MIT License UpdatedNov 10, 2023 -
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SMDAGui_dev Public
Simple Molecular Dynamic Analysis Graphical interface
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RSPFilter Public
Homogeneous filtering of Relion Star Particles File.
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screening_protocol Public
Screening protocol with AUTODOCK-GPU
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MRCcleaner Public
Correct a MRC file with fftshift and mirror it to have it fully symmetrical and spherical.
Python MIT License UpdatedDec 31, 2022 -
alphasub Public
Submission server for colabfold (alphafold) for I2BC institute
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panel-chemistry Public
Forked from awesome-panel/panel-chemistry🧪📈 🐍. The purpose of the panel-chemistry project is to make it really easy for you to do DATA ANALYSIS and build powerful DATA AND VIZ APPLICATIONS within the domain of Chemistry using using Python…
Python Apache License 2.0 UpdatedMay 10, 2022 -
analysisMDnotebooks Public
Personal repository for storing notebooks used for MD Analysis.
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peprmint-web Public
Forked from reuter-group/peprmint-webWeb-tool for calculating and visualizing hydrophobic protrusions
TypeScript UpdatedNov 17, 2021 -
colorMSAwithSSE Public
Generate a image from a multiple sequence alignment (MSA) colored by the secondary structures elements (SSE)
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PBxplore Public
Forked from pierrepo/PBxploreA suite of tools to explore protein structures with Protein Blocks 🐍
Python MIT License UpdatedMay 25, 2020 -
pypdb Public
Forked from williamgilpin/pypdbA Python API for the RCSB Protein Data Bank (PDB)
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propka2graph Public
This python script take propka output and then do some stat on residues pka.
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Extract_Last_Frame Public
Extract last frame from gromacs simulation
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