A Claude Code Plugin that provides an autonomous AI copywriter.

R package for bayesNMf, a computationally efficient Gibbs sampler for Bayesian Poisson NMF which automatically determines the number of latent factors while quantifying uncertainties of the learned…

Publication Page for MPAL Paper 2019

Step-by-step guide for installing scientific libraries for R and Python in ways that maximize their performance

(Python, R, C) Poisson matrix factorization (non-Bayesian version) (recommender systems)

A visual introduction to probability and statistics.

snpnet: Fast and scalable lasso/elastic-net solver for large SNP data

Algorithms for Bayesian nonnegative matrix factorization

Supervised Negative Binomial NMF for Mutational Signature Discovery

Variant- and Haplotype-aware CRISPR guide design toolkit

S3 Bucket Browser

Cloudflare error page generator (unofficial)

A versatile visualization suite for scRNA-seq analysis and other applications. Available on CRAN.

Gene Set Analysis Benchmark (GSABenchmark) evaluates the accuracy and efficiency of gene set analysis methods for scRNA-seq.

A collection of simple tools for scRNA-seq analysis and R package development.

BlackHole is a modern macOS audio loopback driver that allows applications to pass audio to other applications with zero additional latency.

Code accompanying "Combining Real-World and Randomized Control Trial Data Using Data-Adaptive Weighting via the On-Trial Score"

A computational framework for detecting directional selection in regulatory sequences through phenotypic predictions and phenotype-to-fitness models.

EGGROLL in C, integer-first training

Fully automatic censorship removal for language models

Graph Neural Networks in R using {torch}

code for our publication

DOTSeq is an R package for identifying differentially translated open reading frames from ribosome profiling and matched RNA-seq datasets.