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galaxyproject / galaxy

Data intensive science for everyone.

Python 1,679 1,111 Updated Nov 27, 2025

pypa / packaging.python.org

Python Packaging User Guide

Python 1,582 1,395 Updated Nov 26, 2025

geerlingguy / ansible.jeffgeerling.com

Jeff Geerling's Ansible content site

HTML 47 8 Updated Sep 20, 2025

hashicorp / vagrant

Vagrant is a tool for building and distributing development environments.

Ruby 27,120 4,450 Updated Nov 27, 2025

sophia0509 / Consensus-assembly-and-variant-calling-workflow.

Forked from nmdp-bioinformatics/flow

Consensus assembly and variant calling workflow.

1 Updated May 26, 2015

sophia0509 / VariantAnalysis-Bioinformatic-variant-calling-pipeline.

Forked from PlantandFoodResearch/VariantAnalysis

A bioinformatic variant calling pipeline

Jupyter Notebook 1 Updated Sep 8, 2016

sophia0509 / variant-calling-pipeline-gatk4

Forked from gencorefacility/variant-calling-pipeline-gatk4

Variant Calling Pipeline Using GATK4 and Nextflow

Nextflow 1 Updated Dec 18, 2020

joshwcomeau / guppy

🐠A friendly application manager and task runner for React.js

JavaScript 3,267 154 Updated May 27, 2021

fishnchips-basecaller / fishnchips

DNA Basecaller for Oxford Nanopore sequencers using the Transformer architecture

Python 3 Updated Dec 28, 2020

nanoporetech / bonito

A PyTorch Basecaller for Oxford Nanopore Reads

Python 428 132 Updated Nov 16, 2025

lh3 / seqtk

Toolkit for processing sequences in FASTA/Q formats

C 1,514 327 Updated Jun 1, 2025