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oncoEnrichR Public
Explore the cancer relevance of your gene list
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pharmOncoX Public
Targeted and non-targeted anticancer drugs and drug regimens
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geneOncoX Public
Human gene annotations for the oncology domain
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phenOncoX Public
Crossmapped phenotype ontologies for the oncology domain
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literatureVault Public
Biomedical literature reference data for precision cancer medicine
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gwasOncoX Public
Cancer variant data from genome-wide association studies (GWAS)
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crisprFlow Public
Functions to analyze and visualize CRISPR perturbation data
R GNU Affero General Public License v3.0 UpdatedNov 11, 2025 -
cpsr Public
Cancer Predisposition Sequencing Reporter (CPSR)
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pcgr Public
Personal Cancer Genome Reporter (PCGR)
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vcfhelpR Public
Functions to order, write and crossmap VCF/BED records in R
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gwAutophagy Public
Shiny app for exploring the dynamics of genome-wide autophagy data in yeast
R UpdatedDec 12, 2024 -
cancerHotspots Public
R data package with mutational hotspots in cancer
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gvanno Public
Generic human DNA variant annotation pipeline
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opentargets_pp Public
Pre-processing of target, drug and indication data from raw JSON data downloaded from Open Targets Platform
R MIT License UpdatedDec 1, 2023 -
portfolio Public
Forked from arifszn/gitprofile🚀 Create a dynamic portfolio by just providing your GitHub username.
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vcf2tsvpy Public
Genomic VCF to tab-separated values
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skywalkR Public
Forked from AstraZeneca/skywalkRcode for Gogleva et al manuscript
R Apache License 2.0 UpdatedNov 30, 2022 -
dnamelt Public
Software to calculate melting profile for a DNA sequence
Perl GNU General Public License v3.0 UpdatedOct 10, 2022 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJul 19, 2022 -
gtexRNA Public
Gene expression retrieval with GTEx API
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cacao Public
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
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gganatogram Public
Forked from jespermaag/gganatogramCreate anatograms using ggplot2
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2020plusDocker Public
Docker set up for https://github.com/KarchinLab/2020plus
Dockerfile UpdatedNov 6, 2018 -
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sv_anno Public
Processing and annotation of somatic structural variants
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plsd Public
Prospective Lynch Syndrome Database (PLSD) - cumulative risk for cancer by age, genetic variant, and gender
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