rsGSVA (reference stabilizing GSVA) is an R package for computing GSVA scores with a reference dataset

tools for adding mutations to existing .bam files, used for testing mutation callers

Finder of Somatic Fusion Genes in RNA-seq data

Fast and accurate gene fusion detection from RNA-Seq data

STAR-Fusion codebase

Perl modules of SOAPfuse, a tool for identifying fusion transcripts from paired-end RNA-Seq data.

A short guide on how to extract DEGs (differential expressed genes) from Fastq file using a combination of Rsubred and Deseq2

Rmd source files for the HarvardX series PH525x

The Pharmacogenomic Clinical Annotation Tool

A set of tools to annotate VCF files with expression and readcount data

Converts a VCF file to a BED file