Skip to content

scams-research/centre-of-mass

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

On the Estimation of Centre of Mass in Periodic Systems

Calculation of the centre of mass of a group of particles in a periodically-repeating cell is an important aspect of chemical and physical simulation. One popular approach calculates the centre of mass via the projection of the individual particles' coordinates onto a circle [Bai & Breen, J. Graph. Tools, 13(4), 53, (2008)]. However, this approach involves averaging of the particles in a non-physically meaningful way resulting in inaccurate centres of mass. Instead the intrinsic weighted average should be computed, but the analytical calculation of this is computationally expensive and complex. Here, we propose a more computationally efficient approach to compute the intrinsic mean that is suitable for the majority of chemical systems.


Article status Article tarball Read the article

Harry Richardson, Josh Dunn, and Andrew R. McCluskey*
*[email protected]


This is the electronic supplementary information (ESI) associated with the publication "On the Estimation of Centre of Mass in Periodic Systems". This ESI uses showyourwork to provide a completely reproducible and automated analysis, plotting, and paper generation workflow. To run the workflow and generate the paper locally using the cached data run the following:

git clone [email protected]:scams-research/centre-of-mass.git
cd centre-of-mass
pip install showyourwork
showyourwork build 

Full details of the workflow can be determined from the Snakefile and the showyourwork.yml.