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Deciding to use a batch corrected matrix in with decoupleR::run_ulm

Status: Open.

#175 In saezlab/decoupleR;

· Rose-Hedderman opened on Sep 8, 2025

Handling of duplicated gene symbols in run_ulm()

Status: Open.

#174 In saezlab/decoupleR;

· kakaka1221 opened on Sep 3, 2025

decoupleR::get_progeny fails

Status: Open.

#173 In saezlab/decoupleR;

· ZZQ-1117 opened on Aug 22, 2025

Confirm DoRothEA confidence level in CollecTRI

Status: Open.

#172 In saezlab/decoupleR;

· liezeltamon opened on Aug 11, 2025

TF all down-regulated in a cluster after rankby group.

Status: Open.

#171 In saezlab/decoupleR;

· wariobrega opened on Aug 7, 2025

Clustering Based on TF Activity

Status: Open.

#170 In saezlab/decoupleR;

· TalaNoun opened on Jul 28, 2025

URLError: <urlopen error [SSL: UNEXPECTED_EOF_WHILE_READING] EOF occurred in violation of protocol (_ssl.c:1017)>

Status: Open.

#169 In saezlab/decoupleR;

· king2306-s opened on Jul 25, 2025

Package dependencies not installed

Status: Open.

#168 In saezlab/decoupleR;

· JABioinf opened on Jul 25, 2025

Recent versions here are well behind those available from bioconductor?

Status: Open.

#167 In saezlab/decoupleR;

· jefferys opened on Jul 16, 2025

decoupleR::get_collectri [WARNING]

Status: Open.

#166 In saezlab/decoupleR;

· maartenciers opened on Jun 6, 2025

Problem with Organism in get_collectri

Status: Open.

#164 In saezlab/decoupleR;

· Estella-1017 opened on May 15, 2025

Comparing results from multiple conditions

Status: Open.

#163 In saezlab/decoupleR;

· nagendraKU opened on Apr 28, 2025