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@stewart-lab

stewart-lab

The Stewart Computational Biology group at the Morgridge Institute for Research

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  1. SKiM SKiM Public

    Serial KinderMiner (or simply SKiM) is general literature-based discovery system for querying all ~30 million PubMed abstracts.

    Python 8 1

  2. kinderminer_kg kinderminer_kg Public

    Build a knowledge graph from PubMed abstracts using KinderMiner, Prodigy, and spaCy

    Python 6

  3. skimgpt skimgpt Public

    Evaluate hypotheses at scale.

    Python 4

  4. CHARTS CHARTS Public

    CHARTS: Characterizing Tumor Subpopulations

    Python 3

  5. scRNAseq_downstream scRNAseq_downstream Public

    Code for the analysis of the pig retinal organoid data from David Gamm

    Jupyter Notebook 2

  6. blue_whale blue_whale Public

    Blue whale project related scripts and small datasets

    R 1

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