Codes supporting 2025 high-res WTD static paper

BreastDCEDL is a deep learning–ready DCE-MRI dataset of 2,070 breast cancer patients, sourced from I-SPY1, I-SPY2 and the DUKE cohort.

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Code for the manuscript "A self-supervised multi-layer network of Rectified Spectral Units (ReSUs)" submitted to NeurIPS

This module computes a thermodynamic-style equilibrium score \(E_s(\chi)\) from two exponential relaxation models and a smooth scaling field, then maps that score into a bounded phase angle \(\thet…

Learn single-cell dynamics using neural differential equations

Clair3-RNA - a long-read small variant caller for RNA sequencing data

AI coding agent with E2B sandbox

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

The Late Quaternary climate impact on the genome of the woodland strawberry (Fragaria vesca), a perennial herb

Companion to https://github.com/scDiffEq/scDiffEq

A DSL for data-driven computational pipelines

code for material mechanism datasets construction